Jason Tsai
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posted a message
“Sequencing Projects - definitely need to impose logs/documentation/strict data directory/subversion on every stage you take!”
Wednesday at 9:15 am - Link
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“first day at work. LOVE the lab (so far) in Sanger. very excited. still haven't finished thesis, though.”
Monday at 5:32 am - Link
New things are so exciting. - Mr. Gunn
lucky you! - Yann Abraham
that's great news. I remember you asking for interview tips (if atherosclerosis haven't destroyed my memory yet). Good luck with everything. - Paulo Nuin
What team are you in? - Jan Aerts
thanks. in team 81 (if I pass the probation that is) - Jason Tsai
FriendFeed
posted a message
“moving to cambridge tomorrow. job starting within a month. thesis needs to be done within a month. everything happens so fast that i am not feeling anything”
November 6 at 3:02 pm - Link
FriendFeed
posted a message
“bed. it's pretty low risk of upset right now.”
November 4 at 7:30 pm - Link
FriendFeed
posted a message
“no weekend for me, as for anyone who's writing and researching :P”
October 24 at 10:11 am - Link
FriendFeed
posted a message
“now really feeling the thesis writing stress: overweight, undermotivated, nopaid, and extra analysis realised by day”
October 23 at 7:26 am - Link
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posted a message
“finally sorted out the 1000+ unread items in google reader... printing lots of papers now”
October 18 at 8:35 am - Link
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posted a message
“and I received an email with the job offer. :)”
October 16 at 9:42 am - Link
congrats - Paulo Nuin
Awesome... I hope to be in that position soon... - Ricardo Vidal
congrats! - Mr. Gunn
thanks. now back to thesis writing..... at least I know I won't be hungry in difficult times.. - Jason Tsai
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posted a message
“exam done. interview done. now back to thesis writing”
October 16 at 8:30 am - Link
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posted a message
“difficult to make 3 years of work into a 20 minutes presentation...”
October 9 at 7:15 am - Link
how conserved are the recombination hot spots with the ones in S. cerevisiae ? From that slide they look to be generally conserved. - Pedro Beltrao
very conserved! :) 7 out of 10 hotspots in cerevisiae are found in paradoxus. And this contradicts to theories that hotspots are not really conserved between species. - Jason Tsai
interesting ... I think there was a paper mapping double strand breaks in S. pombe (I think in PLoS Genetics but I am not sure). Since they are supposed to be somewhat correlate with the recombination hotspots maybe it would be interesting to see how conserved those are. - Pedro Beltrao
ah~ last thing I want is a good comment with lots of things already going on :P probably difficult because the synteny of S. pome and S. paradoxus are not that conserved. - Jason Tsai
FriendFeed
posted a message
“helping a fellow beginning student to debug his Perl code. always remember to put ;, $, and @ in correct places.”
September 26 at 9:24 am - Link
FriendFeed
posted a message
“question: when you receive your PhD degree. Does it say PhD in Molecular Biology, Computational biology, etc etc. Or just PhD?”
September 25 at 10:38 am - Link
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posted a message
“hopefully I'll break the (unofficial) record of producing the shortest thesis.”
September 18 at 7:04 am - Link
how long (or short)? - Paulo Nuin
probably under 100 pages - Jason Tsai
mine had 96 I think, half of them of figures. - Paulo Nuin
FriendFeed
posted a message
“I like my supervisors - they are a rarity these days”
September 16 at 6:01 am - Link
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posted a message
“searching post docs in the UK, struggling at the moment.”
September 9 at 6:21 am - Link
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posted a message
“submitting 2 papers in a month. Really really would like to write a paper that everyone understands”
September 6 at 10:47 am - Link
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posted a message
“took whole day to sort out papers I have printed and read. n=458, of which 44 are printed more than once...”
September 1 at 8:44 am - Link
FriendFeed
posted a message
“workshop on producing a best alignment, conclusion? no conclusion”
August 29 at 7:59 am - Link
Best alignments? I've never seen one ;) - Pawel Szczesny
With so much problem on producing a "best" tree.... and this :P - Jason Tsai
There are good alignments, but not many very good/excellent alignments. There are no real alignments. - Paulo Nuin
FriendFeed
posted a message
“job ads: requires the ability to work unsupervised. I have to say I am the perfect candidate; would hand in thesis on time given supervisor on sabbatical for 6 months..”
August 15 at 3:46 pm - Link
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posted a message
“worst nightmare for a population geneticist: all data are expected in equilibrium, no significance in any test”
August 15 at 5:42 am - Link
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posted a message
“I finally came up with the idea of my PhD final chapter! I woud like to see if there is a difference in pop gen parameters inferred from different sequencing technologies (PCR, Solexa, 454)...”
July 17 at 4:30 am - Link
sounds like a good idea and useful information - Pedro Beltrao
Yeah, there is a lot of comments/rumours about different type of next generation technologies. Too bad most of them are published in big named journals (so lack of methods..) It would be nice to confirm that - Jason Tsai
You might be interested in the following from Nature Methods: http://www.nature.com/nmeth/jo... Apologies if you've already seen it. - Mr. Gunn
I've got some related links here: http://www.connotea.org/user/w... - Mr. Gunn
Thanks. I have only seen some of these. These papers however, only point to what the technologies may be biased towards, but to my knowledge, there is not yet an empirical comparison of these data. It's easy to do, just need the right data somewhere. - Jason Tsai
Blog
posted an entry on paradoxus
July 17 at 1:02 pm - Link
FriendFeed
posted a message
“type up_arrow, up_arrow,down_arrow,down_arrow, left_arrow,right_arrow,left_arrow,right_arrow, B, A, in your google reader and find the easter egg...”
June 13 at 3:33 pm - Link
Blog
posted an entry on paradoxus
June 4 at 4:13 pm - Link
FriendFeed
posted a message
“doing a poster for SMBE.. three years of work into a tiny piece of paper”
May 27 at 1:45 pm - Link
I'll keep a look out for your poster, I'll come and say hello. - Michael Barton
FriendFeed
posted a message
“Is it a glitch? When posting a new paper into your CiteUlike library, the date on friendfeeed is the date that the paper was first cited in CiteULike..”
June 3 at 3:46 pm - Link
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